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Jun 21, 2023

A new tool to study complex genome interactions

Posted by in categories: biotech/medical, genetics, health

People who owned black-and-white television sets until the 1980s didn’t know what they were missing until they got a color TV. A similar switch could happen in the world of genomics as researchers at the Berlin Institute of Medical Systems Biology of the Max Delbrück Center (MDC-BIMSB) have developed a technique called Genome Architecture Mapping (“GAM”) to peer into the genome and see it in glorious technicolor. GAM reveals information about the genome’s spatial architecture that is invisible to scientists using solely Hi-C, a workhorse tool developed in 2009 to study DNA interactions, reports a new study in Nature Methods by the Pombo lab.

“With a black-and-white TV, you can see the shapes but everything looks gray,” says Professor Ana Pombo, a and head of the Epigenetic Regulation and Chromatin Architecture lab. “But if you have a color TV and look at flowers, you realize that they are red, yellow and white and we were unaware of it. Similarly, there’s also information in the way the genome is folded in three-dimensions that we have not been aware of.”

Understanding DNA organization can reveal the basis of health and disease. Our cells pack a 2-meter-long genome into a roughly 10 micrometer-diameter nucleus. The packaging is done precisely so that regulatory DNA comes in contact with the right genes at the right times and turns them on and off. Changes to the three-dimensional configuration can disrupt this process and cause disease.

Jun 21, 2023

How ultrasound therapy could treat everything from ageing to cancer

Posted by in categories: biotech/medical, life extension

Ultrasound is most familiar to us as a non-invasive imaging technology used during pregnancy – now it is in clinical trials as a powerful new tool for treating all sorts of medical conditions.

By Kayt Sukel

Jun 21, 2023

Polyamines (Including Spermidine) Extend Lifespan: What’s My Data?

Posted by in categories: biotech/medical, genetics, life extension

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Jun 21, 2023

DeepMind’s RoboCat learns to perform a range of robotics tasks

Posted by in categories: robotics/AI, virtual reality

DeepMind says that it has developed an AI model, called RoboCat, that can perform a range of tasks across different models of robotic arms. That alone isn’t especially novel. But DeepMind claims that the model is the first to be able to solve and adapt to multiple tasks and do so using different, real-world robots.

“We demonstrate that a single large model can solve a diverse set of tasks on multiple real robotic embodiments and can quickly adapt to new tasks and embodiments,” Alex Lee, a research scientist at DeepMind and a co-contributor on the team behind RoboCat, told TechCrunch in an email interview.

RoboCat — which was inspired by Gato, a DeepMind AI model that can analyze and act on text, images and events — was trained on images and actions data collected from robotics both in simulation and real life. The data, Lee says, came from a combination of other robot-controlling models inside of virtual environments, humans controlling robots and previous iterations of RoboCat itself.

Jun 21, 2023

Study says AI data contaminates vital human input

Posted by in category: robotics/AI

At the turn of this century, Jeff Bezos popularized the use of mechanical turks—low-paid workers working remotely with perhaps thousands of others on tiny parts of larger computer projects—to ensure a human perspective on mostly simple tasks that proved perplexing to computers. He termed this blending of human and digital brain power “artificial artificial intelligence.”

About a quarter million people are employed through Amazon’s Mechanical Turk marketplace, just one of many sources providing such services.

This week, researchers at Swiss-based university EPFL reported that turks who had provided important human input are now relying on AI-generated content to complete their tasks. They dubbed this phenomenon “artificial artificial artificial intelligence.”

Jun 21, 2023

Introducing Chinmo — The Youth Gene

Posted by in categories: biotech/medical, evolution, genetics, life extension

Insects, with their remarkable ability to undergo complete metamorphosis, have long fascinated scientists seeking to understand the underlying genetic mechanisms governing this transformative process.

Now, a recent study conducted by the Institute for Evolutionary Biology (IBE, CSIC-UPF) and the IRB Barcelona has shed light on the crucial role of three genes – Chinmo, Br-C and E93 – in orchestrating the stages of insect development. Published in eLife, this research provides valuable insights into the evolutionary origins of metamorphosis and sheds new light on the role of these genes in growth, development and cancer regulation [1].

Longevity. Technology: Chinmo might sound like a Pokémon character, but the truth is much more interesting. Conserved throughout the evolution of insects, scientists think it, and the more conventionally-named Br-C and E93, could play a key role in the evolution of metamorphosis, acting as the hands of the biological clock in insects. A maggot is radically different from the fly into which it changes – could understanding and leveraging the biology involved one day allow us to change cultured skin cells into replacement organs or to stop tumors in their early stages of formation? No, Dr Seth Brundle, you can buzz off.

Jun 21, 2023

Designing Out Waste: Circular Fashion Shifts Consumer Choices

Posted by in categories: business, economics

One hundred thousand tons of clothes dumped illegally in a Chilean desert. The tragic collapse of the Rana Plaza garment factory in Bangladesh… People are increasingly turning to a concept called “circular fashion” that may help end situations like that. Beyond Reduce, Reuse and Recycle, it encourages innovative designs and values that attract both young and old. We catch up with some of the new business models, as well as the people buying into these novel products and services.

Guest:

Yasui Akihiro (Circular-economy researcher)

Jun 21, 2023

Strong solar winds, CME approaching Earth; Could trigger G1-class Geomagnetic storm soon

Posted by in category: space

Just yesterday, an unstable sunspot named AR3335 exploded, producing a solar flare that triggered blackouts over the Atlantic Ocean. The resulting solar flare was M2.5 in intensity and caused a shortwave radio blackout. Solar activity has been on the rise for the past few months, and it is expected to increase further until solar maximum, the period of greatest solar activity during the Sun’s 11-year cycle.

Solar flare risk

According to a report by spaceweather.com, NASA’s Solar Dynamics Observatory (SDO) forecasters have observed multiple streams of solar winds hurtling towards Earth from a coronal hole on the Sun’s surface, and these could reach Earth tomorrow, June 21. Moreover, a CME is also expected to deliver a glancing blow on June 22. Both these events have the potential to trigger a G1-class Geomagnetic storm. It could also result in solstice auroras at high latitudes.

Jun 21, 2023

Observations of high-mass star seeds defy models

Posted by in categories: cosmology, evolution

Astronomers have mapped 39 interstellar clouds where high-mass stars are expected to form. This large data set shows that the accepted model of low-mass star formation needs to be expanded to explain the formation of high-mass stars. This suggests the formation of high-mass stars is fundamentally different from the formation of low-mass stars, not just a matter of scale.

High-mass stars play an important role in the evolution of the universe through the release of heavy elements and the produced when a massive star explodes in a supernova. Despite their importance, the way form remains poorly understood due to their rarity.

To better understand massive star formation a team led by Kaho Morii, Patricio Sanhueza, and Fumitaka Nakamura used the Atacama Large Millimeter/submillimeter Array (ALMA) to observe 39 infrared dark clouds (IRDCs). IRDCs are massive, cold, and dense clouds of gas and dust; and are thought to be the sites of massive star formation. The team focused on clouds showing no signs of star formation, to understand the beginning of the formation process before ignite. In the 39 clouds, the team found more than 800 stellar seeds, referred to as molecular cloud cores, which astronomers think will evolve into stars.

Jun 21, 2023

Did Life Evolve More Than Once? Researchers Are Closing In on an Answer

Posted by in category: chemistry

Eventually, these molecules probably evolved a lipid (fatty) boundary separating the internal environment of the organism from the exterior, forming protocells. Protocells could concentrate and organize better the molecules needed in biochemical reactions, providing a contained and efficient metabolism.

Life on Repeat?

Abiogenesis could have happened more than once. Earth could have birthed self-replicating molecules several times, and maybe early life for thousands or millions of years just consisted of a bunch of different self-replicating RNA molecules, with independent origins, competing for the same building blocks. Alas, due to the ancient and microscopic nature of this process, we may never know.