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May 11, 2022

EClock: An ensemble-based method to accurately predict ages with a biased distribution from DNA methylation data

Posted by in categories: biotech/medical, robotics/AI

For instance, when training a gestational age clock model from placental methylation, a sample can only be collected after delivery of the baby and the placenta. So most samples have a gestational age greater than 30 weeks, which corresponds to moderate preterm and full-term births. For samples with a further younger gestational age, they are scarce, which makes the sample distribution seriously biased to large gestational ages and impairs the ability of the trained model to predict small ones. However, differences in gestational age as small as one week can significantly influence neonatal morbidity and mortality and long-term outcomes [18 23]. Hence, the model’s accuracy across the whole gestational age range becomes essential.

To solve this problem, we developed the R package eClock (ensemble-based clock). It improves the traditional machine learning strategy in handling the imbalance problem of category data [24], and combines bagging and SMOTE (Synthetic Minority Over-sampling Technique) methods to adjust the biased age distribution and predict DNAm age with an ensemble model. This is the first time applying these techniques to the clock model, bringing a new framework for clock model construction. eClock also provides other functions, such as training the traditional clock model, displaying features, and converting methylation probe/gene/DMR (DNA methylation region) values. To test the performance of the package, we used 3 different datasets, and the results show that the package can effectively improve the clock model performance on rare samples.

May 11, 2022

How “Photonic Computers” Could Use Light Instead of Electricity

Posted by in category: computing

At the time of writing, scientists and engineers still haven’t figured out how to replicate every computer component that currently exists within semiconductor processors. Computation is nonlinear. It requires that different signals interact with each other and change the outcomes of other components. You need to build logic gates in the same way that semiconductor transistors are used to create logic gates, but photons don’t behave in a way that naturally works with this approach.

This is where photonic logic comes into the picture. By using nonlinear optics it’s possible to build logic gates similar to those used in conventional processors. At least, in theory, it could be possible. There are many practical and technological hurdles to overcome before photonic computers play a significant role.

May 11, 2022

3 Takeaways After Debuting Stretch at MODEX 2022

Posted by in categories: materials, robotics/AI

After launching our warehouse robot Stretch at #MODEX2022, we heard from a lot of warehouse and materials handling professionals. Check out our biggest takeaway… See more.


Launching Stretch, our autonomous warehouse robot, at MODEX 2022, we found consistent themes about the state of warehouse automation and material handling.

May 11, 2022

Black Holes and the Quantum-Extended Church-Turing Thesis | Quantum Colloquium

Posted by in categories: computing, cosmology, quantum physics

Leonard Susskind (Stanford University)
https://simons.berkeley.edu/events/quantum-colloquium-black-…ing-thesis.
Quantum Colloquium.

A few years ago three computer scientists named Adam Bouland, Bill Fefferman, and Umesh Vazirani, wrote a paper that promises to radically change the way we think about the interiors of black holes. Inspired by their paper I will explain how black holes threaten the QECTT, and how the properties of horizons rescue the thesis, and eventually make predictions for the complexity of extracting information from behind the black hole horizon. I’ll try my best to explain enough about black holes to keep the lecture self contained.

Continue reading “Black Holes and the Quantum-Extended Church-Turing Thesis | Quantum Colloquium” »

May 11, 2022

Chipmaker NXP considers Austin for $2.6 billion expansion, up to 800 new jobs

Posted by in categories: employment, energy

In a move that could add even more fuel to the booming Central Texas high-tech sector, chipmaker NXP Semiconductors is considering a $2.6 billion expansion in Austin that would create up to 800 jobs.

The potential expansion is the latest big project for which the Austin area is in the running. Tech firm Applied Materials said in March that it’s considering Hutto for a $2.4 billion research and development center, while chipmaker Infineon Technologies said in February that it’s considering Austin for a $700 million expansion.

NXP Semiconductors, which is based in the Netherlands and has two fabrication plants in Austin, is seeking tax breaks from the Austin Independent School District under the state’s Chapter 313 incentive program for proposed expansion. An initial presentation to the district’s board Tuesday night didn’t specify the amount, but previous incentives agreements from Texas school districts for similar Chapter 313 deals have been for tens of millions of dollars.

May 11, 2022

MICrONS: The MICrONS program aims to close the performance gap between human analysts and automated pattern recognition systems by reverse-engineering the algorithms of the brain

Posted by in categories: information science, robotics/AI

Summary

The human brain has the, remarkable ability to learn patterns from small amounts of data and then recognize novel instances of those patterns despite distortion and noise. Although advances in machine learning algorithms have been weakly informed by the brain since the 1940’s, they do not yet rival human performance.

May 11, 2022

The Brain Has a Built-in System to Keep Unwanted Memories Out, Study Finds

Posted by in category: neuroscience

A new study in the Journal of Neuroscience has some answers. By scanning the brains of 24 people actively suppressing a particular memory, the team found a neural circuit that detects, inhibits, and eventually erodes intrusive memories.

A trio of brain structures makes up this alarm system. At the heart is the dACC (for “dorsal anterior cingulate cortex”), a scarf-like structure that wraps around deeper brain regions near the forehead. It acts like an intelligence agency: it monitors neural circuits for intrusive memories, and upon discovery, alerts the “executive” region of the brain. The executive then sends out an abort signal to the brain’s memory center, the hippocampus. Like an emergency stop button, this stops the hippocampus from retrieving the memory.

The entire process happens below our consciousness, suppressing unwanted memories so that they never surface to awareness.

May 11, 2022

An ultra-bright nova hid an elusive new phenomena — but astronomers caught it in action

Posted by in category: space

The nova phase can help astronomers understand what causes certain kinds of stellar explosions.

May 11, 2022

How life could have arisen on an ‘RNA world’

Posted by in category: futurism

New evidence suggests RNA and peptides may have helped build each other on early Earth.

May 11, 2022

Gravity signals could detect earthquakes at the speed of light

Posted by in categories: climatology, computing, information science, physics

Algorithm set for deployment in Japan could identify giant temblors faster and more reliably.


Two minutes after the world’s biggest tectonic plate shuddered off the coast of Japan, the country’s meteorological agency issued its final warning to about 50 million residents: A magnitude 8.1 earthquake had generated a tsunami that was headed for shore. But it wasn’t until hours after the waves arrived that experts gauged the true size of the 11 March 2011 Tohoku quake. Ultimately, it rang in at a magnitude 9—releasing more than 22 times the energy experts predicted and leaving at least 18,000 dead, some in areas that never received the alert. Now, scientists have found a way to get more accurate size estimates faster, by using computer algorithms to identify the wake from gravitational waves that shoot from the fault at the speed of light.

“This is a completely new [way to recognize] large-magnitude earthquakes,” says Richard Allen, a seismologist at the University of California, Berkeley, who was not involved in the study. “If we were to implement this algorithm, we’d have that much more confidence that this is a really big earthquake, and we could push that alert out over a much larger area sooner.”

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