Engineered enzymes are poised to have transformative impacts across applications in energy, materials, biotechnology, and medicine. Recently, machine learning has emerged as a useful tool for enzyme engineering. Now, a team of bioengineers and synthetic biologists says they have developed a machine-learning guided platform that can design thousands of new enzymes, predict how they will behave in the real world, and test their performance across multiple chemical reactions.
Their results are published in Nature Communications in an article titled, “Accelerated enzyme engineering by machine-learning guided cell-free expression,” and led by researchers at Stanford University and Northwestern University.
“Enzyme engineering is limited by the challenge of rapidly generating and using large datasets of sequence-function relationships for predictive design,” the researchers wrote. “To address this challenge, we develop a machine learning (ML)-guided platform that integrates cell-free DNA assembly, cell-free gene expression, and functional assays to rapidly map fitness landscapes across protein sequence space and optimize enzymes for multiple, distinct chemical reactions.”
