Lifeboat Foundation

Artificial neural networks are famously inspired by their biological counterparts. Yet compared to human brains, these algorithms are highly simplified, even “cartoonish.”

Can they teach us anything about how the brain works?

For a panel at the Society for Neuroscience annual meeting this month, the answer is yes. Deep learning wasn’t meant to model the brain. In fact, it contains elements that are biologically improbable, if not utterly impossible. But that’s not the point, argues the panel. By studying how deep learning algorithms perform, we can distill high-level theories for the brain’s processes—inspirations to be further tested in the lab.

sustained technological superiority, and asset security and repair for current and future operations.

To meet this unique challenge, DARPA announced it is taking an initial step to explore and de-risk manufacturing capabilities that leverage biological processes in resource limited environments with its Biomanufacturing: Survival, Utility, and Reliability beyond Earth (B-SURE) program. https://www.darpa.mil/news-events/2021-11-22

The SARS-CoV-2 gene set remains unresolved, hindering dissection of COVID-19 biology. Comparing 44 Sarbecovirus genomes provides a high-confidence protein-coding gene set. The study characterizes protein-level and nucleotide-level evolutionary constraints, and prioritizes functional mutations from the ongoing COVID-19 pandemic.

Rarely does scientific software spark such sensational headlines. “One of biology’s biggest mysteries ‘largely solved’ by AI”, declared the BBC. Forbes called it “the most important achievement in AI — ever”. The buzz over the November 2020 debut of AlphaFold2, Google DeepMind’s (AI) system for predicting the 3D structure of proteins, has only intensified since the tool was made freely available in July.

The excitement relates to the software’s potential to solve one of biology’s thorniest problems — predicting the functional, folded structure of a protein molecule from its linear amino-acid sequence, right down to the position of each atom in 3D space. The underlying physicochemical rules for how proteins form their 3D structures remain too complicated for humans to parse, so this ‘protein-folding problem’ has remained unsolved for decades.

Researchers have worked out the structures of around 160,000 proteins from all kingdoms of life. They have been using experimental techniques, such as X-ray crystallography and cryo-electron microscopy (cryo-EM), and then depositing their 3D information in the Protein Data Bank. Computational biologists have made steady gains in developing software that complements these methods, and have correctly predicted the 3D shapes of some molecules from well-studied protein families.

Soot is one of the world’s worst contributors to climate change. Its impact is similar to global methane emissions and is second only to carbon dioxide in its destructive potential. This is because soot particles absorb solar radiation, which heats the surrounding atmosphere, resulting in warmer global temperatures. Soot also causes several other environmental and health problems including making us more susceptible to respiratory viruses.

Soot only persists in the atmosphere for a few weeks, suggesting that if these emissions could be stopped then the air could rapidly clear. This has recently been demonstrated during recent lockdowns, with some major cities reporting clear skies after industrial emissions stopped.

But soot is also part of our future. Soot can be converted into the useful carbon black product through thermal treatment to remove any harmful components. Carbon blacks are critical ingredients in batteries, tires and paint. If these carbons are made small enough they can even be made to fluoresce and have been used for tagging biological molecules, in catalysts and even in solar cells.

Rich dynamics in a living neuronal system can be considered as a computational resource for physical reservoir computing (PRC). However, PRC that generates a coherent signal output from a spontaneously active neuronal system is still challenging. To overcome this difficulty, we here constructed a closed-loop experimental setup for PRC of a living neuronal culture, where neural activities were recorded with a microelectrode array and stimulated optically using caged compounds. The system was equipped with first-order reduced and controlled error learning to generate a coherent signal output from a living neuronal culture. Our embodiment experiments with a vehicle robot demonstrated that the coherent output served as a homeostasis-like property of the embodied system from which a maze-solving ability could be generated. Such a homeostatic property generated from the internal feedback loop in a system can play an important role in task solving in biological systems and enable the use of computational resources without any additional learning.

https://www.youtube.com/watch?v=NM7hdDZN2YI

We explore Artificial Intelligence (AI) through Neuromorphic Computing with computer chips that emulate the biological neurons and synapses in the brain. Neuro-biological chip architectures enable machines to solve very different kinds of problems than traditional computers, the kinds of problems we previously thought only humans could tackle.

Our guest today is Kelsey Scharnhorst. Kelsey is an Artificial Neural Network Researcher at UCLA. Her research lab (Gimzewski Lab under James Gimzewski) is focused on creating neuromorphic computer chips and further developing their capabilities.

Continue reading “Neuromorphic Computing, AI Chips Emulating the Brain with Kelsey Scharnhorst on MIND & MACHINE” »

Software extends protein mapping to complexes that govern the breadth of cell biology.

If you own any piece of jewelry with a ruby, you’re probably never going to look at it the same way again.

Forget those perfect gemstones you see glittering in store displays. What scientists are looking for are the flawed ones — the ones that contain inclusions which can whisper the secrets of Earth’s distant past, like that tardigrade trapped in amber. When researcher Chris Yakymchuk and his team unearthed a peculiar ruby in Greenland, the inclusion they found was what remained of life that was over 2.5 billion years old.

What was inside the ruby sounds common enough. Graphite is the same material pencils write with, but it is also a pure form of carbon that Yakymchuk determined to be all that was left of prehistoric microbes, possibly the same cyanobacteria (blue-green algae) that first released oxygen into Earth’s atmosphere through photosynthesis. He led a study recently published in Ore Geology Reviews.